docs: add comprehensive Phase 2 documentation and mark completion

Created detailed user guide for schema refinement tools:
- Command reference for schema-analyze and schema-refine
- Complete options and examples
- Issue type explanations with before/after examples
- Workflow guides (basic, interactive, CI/CD, migration)
- Best practices and troubleshooting
- Integration examples (Git hooks, Makefile, Python)
- Rigidity score interpretation table

Updated TODO.md to mark Phase 2 completion:
- Documented all delivered features
- Listed key capabilities (rigidity detection, auto-refine, interactive mode)
- Noted test coverage (33 tests, 100% passing)
- Added example results (60/100 → 24/100 rigidity reduction)

Phase 2 is now complete and fully documented.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
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@@ -76,6 +76,23 @@ The **capability-capability** includes:
*Recent completed tasks have been documented in _issue-tracking/issue-facade/CHANGELOG.md following Keep a Changelog format.*
### 2026-01-04 - Phase 2: Schema Refinement Tools
- ✅ Implemented schema-analyze command to detect rigidity issues
- ✅ Implemented schema-refine command with automatic loosening logic
- ✅ Added interactive mode to schema-refine for fine-grained control
- ✅ Created comprehensive test suite (33 unit tests, 100% passing)
- ✅ Wrote user guide documentation with examples and workflows
- ✅ Successfully tested on example schemas (reduced rigidity from 60/100 to 24/100)
- ✅ Integrated into CLI with proper exit codes and error handling
**Key Features Delivered:**
- Rigidity score calculation (0-100 scale)
- Automatic detection of exact counts, const values, overly specific numbers
- Path navigation for nested schema properties
- Dry-run mode for previewing changes
- Interactive approval workflow
- Comprehensive reporting (normal and verbose modes)
### 2025-12-17 - Architecture Refactoring
- ✅ Implemented ReusableCapabilitiesArchitecture v0.1
- ✅ Added feedback capability to issue-facade