advanced the review workflow

src/repo_registry/core/service.py

@@ -130,6 +130,8 @@ class RegistryService:
                 confidence=ability.confidence,
             )
             for capability in ability.capabilities:
+                if capability.status != "candidate":
+                    continue
                 approved_capability_id = self.store.create_capability(
                     repository_id,
                     approved_ability_id,
@@ -140,6 +142,8 @@ class RegistryService:
                     confidence=capability.confidence,
                 )
                 for feature in capability.features:
+                    if feature.status != "candidate":
+                        continue
                     self.store.create_feature(
                         repository_id,
                         approved_capability_id,
@@ -149,6 +153,8 @@ class RegistryService:
                         confidence=feature.confidence,
                     )
                 for evidence in capability.evidence:
+                    if evidence.status != "candidate":
+                        continue
                     self.store.create_evidence(
                         repository_id,
                         approved_capability_id,
@@ -172,6 +178,28 @@ class RegistryService:
             self.store.update_repository_status(repository_id, "indexed")
         return self.store.get_ability_map(repository_id)
 
+    def reject_candidate_ability(
+        self,
+        repository_id: int,
+        analysis_run_id: int,
+        candidate_ability_id: int,
+        *,
+        notes: str = "",
+    ) -> CandidateGraph:
+        self.store.reject_candidate_ability(
+            repository_id,
+            analysis_run_id,
+            candidate_ability_id,
+        )
+        self.store.create_review_decision(
+            repository_id,
+            analysis_run_id,
+            action="reject_candidate_ability",
+            notes=notes,
+        )
+        self.store.update_repository_status(repository_id, "reviewing")
+        return self.store.get_candidate_graph(repository_id, analysis_run_id)
+
     def add_ability(
         self,
         repository_id: int,

src/repo_registry/storage/sqlite.py

@@ -383,6 +383,64 @@ class RegistryStore:
                     (status, repository_id, analysis_run_id),
                 )
 
+    def reject_candidate_ability(
+        self,
+        repository_id: int,
+        analysis_run_id: int,
+        candidate_ability_id: int,
+    ) -> None:
+        with self.connect() as connection:
+            ability_cursor = connection.execute(
+                """
+                UPDATE candidate_abilities
+                SET status = 'rejected'
+                WHERE id = ?
+                  AND repository_id = ?
+                  AND analysis_run_id = ?
+                  AND status = 'candidate'
+                """,
+                (candidate_ability_id, repository_id, analysis_run_id),
+            )
+            if ability_cursor.rowcount == 0:
+                raise NotFoundError(
+                    "candidate ability "
+                    f"{candidate_ability_id} was not found for repository "
+                    f"{repository_id} analysis run {analysis_run_id}"
+                )
+            capability_rows = connection.execute(
+                """
+                SELECT id FROM candidate_capabilities
+                WHERE ability_id = ? AND repository_id = ? AND analysis_run_id = ?
+                """,
+                (candidate_ability_id, repository_id, analysis_run_id),
+            ).fetchall()
+            capability_ids = [row["id"] for row in capability_rows]
+            connection.execute(
+                """
+                UPDATE candidate_capabilities
+                SET status = 'rejected'
+                WHERE ability_id = ? AND repository_id = ? AND analysis_run_id = ?
+                """,
+                (candidate_ability_id, repository_id, analysis_run_id),
+            )
+            for capability_id in capability_ids:
+                connection.execute(
+                    """
+                    UPDATE candidate_features
+                    SET status = 'rejected'
+                    WHERE capability_id = ? AND repository_id = ? AND analysis_run_id = ?
+                    """,
+                    (capability_id, repository_id, analysis_run_id),
+                )
+                connection.execute(
+                    """
+                    UPDATE candidate_evidence
+                    SET status = 'rejected'
+                    WHERE capability_id = ? AND repository_id = ? AND analysis_run_id = ?
+                    """,
+                    (capability_id, repository_id, analysis_run_id),
+                )
+
     def create_review_decision(
         self,
         repository_id: int,

src/repo_registry/web_api/app.py

@@ -73,6 +73,10 @@ class CandidateGraphApproval(BaseModel):
     notes: str = ""
 
 
+class CandidateRejection(BaseModel):
+    notes: str = ""
+
+
 app = FastAPI(title="Repository Ability Registry", version="0.1.0")
 
 
@@ -189,6 +193,30 @@ def approve_candidate_graph(
         raise HTTPException(status_code=404, detail=str(exc)) from exc
 
 
+@app.post(
+    "/repos/{repository_id}/analysis-runs/{analysis_run_id}"
+    "/candidate-abilities/{candidate_ability_id}/reject"
+)
+def reject_candidate_ability(
+    repository_id: int,
+    analysis_run_id: int,
+    candidate_ability_id: int,
+    payload: CandidateRejection,
+    service: RegistryService = Depends(get_service),
+) -> dict[str, object]:
+    try:
+        return asdict(
+            service.reject_candidate_ability(
+                repository_id,
+                analysis_run_id,
+                candidate_ability_id,
+                notes=payload.notes,
+            )
+        )
+    except NotFoundError as exc:
+        raise HTTPException(status_code=404, detail=str(exc)) from exc
+
+
 @app.post("/repos/{repository_id}/abilities", status_code=201)
 def create_ability(
     repository_id: int,

src/repo_registry/web_ui/views.py

@@ -280,7 +280,7 @@ def analysis_run_detail(
             <button type="submit">Approve</button>
           </form>
         </div>
-        {render_candidate_graph(asdict(candidate_graph))}
+        {render_candidate_graph(asdict(candidate_graph), repository_id, analysis_run_id)}
       </section>
       <section class="panel">
         <h2>Observed Facts</h2>
@@ -308,7 +308,29 @@ def approve_candidate_graph_from_form(
     return RedirectResponse(f"/ui/repos/{repository_id}", status_code=303)
 
 
-def render_candidate_graph(graph: dict) -> str:
+@router.post(
+    "/ui/repos/{repository_id}/analysis-runs/{analysis_run_id}"
+    "/candidate-abilities/{candidate_ability_id}/reject"
+)
+def reject_candidate_ability_from_form(
+    repository_id: int,
+    analysis_run_id: int,
+    candidate_ability_id: int,
+    service: RegistryService = Depends(get_service),
+) -> RedirectResponse:
+    service.reject_candidate_ability(
+        repository_id,
+        analysis_run_id,
+        candidate_ability_id,
+        notes="Rejected from web UI",
+    )
+    return RedirectResponse(
+        f"/ui/repos/{repository_id}/analysis-runs/{analysis_run_id}",
+        status_code=303,
+    )
+
+
+def render_candidate_graph(graph: dict, repository_id: int, analysis_run_id: int) -> str:
     abilities = graph.get("abilities", [])
     if not abilities:
         return '<p class="muted">No candidates generated.</p>'
@@ -321,6 +343,7 @@ def render_candidate_graph(graph: dict) -> str:
               <strong>{escape(ability['name'])}</strong>
               <span class="pill">{escape(ability['status'])}</span>
               <span class="pill">{ability['confidence']:.2f}</span>
+              {render_candidate_ability_actions(ability, repository_id, analysis_run_id)}
               <p class="muted">{escape(ability['description'])}</p>
               {render_sources(ability['source_refs'])}
               <ul>{capabilities}</ul>
@@ -330,6 +353,24 @@ def render_candidate_graph(graph: dict) -> str:
     return f'<div class="tree"><ul>{"".join(items)}</ul></div>'
 
 
+def render_candidate_ability_actions(
+    ability: dict,
+    repository_id: int,
+    analysis_run_id: int,
+) -> str:
+    if ability["status"] != "candidate":
+        return ""
+    action = (
+        f"/ui/repos/{repository_id}/analysis-runs/{analysis_run_id}"
+        f"/candidate-abilities/{ability['id']}/reject"
+    )
+    return f"""
+    <form style="display:inline" method="post" action="{action}">
+      <button class="secondary" type="submit">Reject</button>
+    </form>
+    """
+
+
 def render_candidate_capability(capability: dict) -> str:
     features = "".join(
         f'<li>{escape(feature["name"])} <span class="pill">{escape(feature["type"])}</span> <span class="source">{escape(feature["location"])}</span></li>'

tests/test_registry_service.py

@@ -206,6 +206,43 @@ def test_approve_candidate_graph_publishes_ability_map_once(tmp_path):
     assert candidate_graph.abilities[0].status == "approved"
 
 
+def test_reject_candidate_ability_excludes_it_from_approval(tmp_path):
+    source = tmp_path / "repo"
+    source.mkdir()
+    (source / "README.md").write_text("# Rejectable\n", encoding="utf-8")
+    (source / "app.py").write_text(
+        "from fastapi import FastAPI\n"
+        "app = FastAPI()\n"
+        '@app.get("/health")\n'
+        "def health():\n"
+        "    return {}\n",
+        encoding="utf-8",
+    )
+
+    service = make_service(tmp_path)
+    repository = service.register_repository(name="Rejectable", url=str(source))
+    summary = service.analyze_repository(repository.id)
+    graph = service.candidate_graph(repository.id, summary.analysis_run.id)
+    candidate = graph.abilities[0]
+
+    rejected_graph = service.reject_candidate_ability(
+        repository.id,
+        summary.analysis_run.id,
+        candidate.id,
+        notes="Too generic.",
+    )
+    ability_map = service.approve_candidate_graph(
+        repository.id,
+        summary.analysis_run.id,
+    )
+
+    assert service.get_repository(repository.id).status == "reviewing"
+    assert rejected_graph.abilities[0].status == "rejected"
+    assert rejected_graph.abilities[0].capabilities[0].status == "rejected"
+    assert rejected_graph.abilities[0].capabilities[0].features[0].status == "rejected"
+    assert ability_map.abilities == []
+
+
 def test_analyze_repository_failure_is_recorded(tmp_path):
     service = make_service(tmp_path)
     repository = service.register_repository(

tests/test_web_api.py

@@ -138,6 +138,20 @@ def test_api_analysis_run_loop(tmp_path):
         assert candidate_graph["abilities"][0]["name"] == (
             "Review Frontend Repository Usefulness"
         )
+        candidate_ability_id = candidate_graph["abilities"][0]["id"]
+
+        reject_response = client.post(
+            f"/repos/{repository_id}/analysis-runs/"
+            f"{run['analysis_run']['id']}/candidate-abilities/"
+            f"{candidate_ability_id}/reject",
+            json={"notes": "Reject once to exercise review correction."},
+        )
+        assert reject_response.status_code == 200
+        assert reject_response.json()["abilities"][0]["status"] == "rejected"
+
+        run_response = client.post(f"/repos/{repository_id}/analysis-runs", json={})
+        assert run_response.status_code == 201
+        run = run_response.json()
 
         approve_response = client.post(
             f"/repos/{repository_id}/analysis-runs/"